Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs9503511 chr6:3268577 C/G 0 118 4.13 44.3 38.33 KM Plot
THYM rs9503512 chr6:3268719 C/G 0 118 4.13 44.3 38.33 KM Plot
THYM rs9514452 chr13:106591856 C/T 0.000116 116 38.23 54.9 28.43 KM Plot
THYM rs9515203 chr13:111049623 C/T 3.7E-5 119 22.7 38.48 46.6 KM Plot
THYM rs9519859 chr13:106586696 A/G 6.68E-5 119 38.33 58.7 28.43 KM Plot
THYM rs9521715 chr13:111015333 G/T 3.91E-6 114 38.33 42.73 44.47 KM Plot
THYM rs9535360 chr13:50408625 T/C 5.0E-5 117 37.63 49.75 73.7 KM Plot
THYM rs9535361 chr13:50409569 T/G 5.0E-5 117 37.63 49.75 73.7 KM Plot
THYM rs9535362 chr13:50412319 C/T 4.66E-5 118 37.13 49.75 73.7 KM Plot
THYM rs9535366 chr13:50416303 C/T 7.68E-5 114 37.13 49.75 73.7 KM Plot
THYM rs9550792 chr13:22515818 C/G 0.00029 117 41.22 32.7 27.1 KM Plot
THYM rs9552553 chr13:22515844 T/C 0.00029 117 41.22 32.7 27.1 KM Plot
THYM rs9568236 chr13:50099439 A/C 1.62E-6 117 42.25 38.13 11.58 KM Plot
THYM rs958025 chr15:78759348 C/T 3.34E-5 119 42.82 42.47 26 KM Plot
THYM rs9581515 chr13:26627222 C/T 3.08E-6 117 40.3 50.85 25.83 KM Plot